SSP: Simulated Sampling Procedure for Community Ecology

Package: SSP 1.1.0

SSP: Simulated Sampling Procedure for Community Ecology

The Simulation-based Sampling Protocol (SSP) is an R package designed to estimate sampling effort in studies of ecological communities. It is based on the concept of pseudo-multivariate standard error (MultSE) (Anderson & Santana-Garcon, 2015, <doi:10.1111/ele.12385>) and the simulation of ecological data. The theoretical background is described in Guerra-Castro et al. (2020, <doi:10.1111/ecog.05284>).

Authors:Edlin Guerra-Castro [aut, cre], Maite Mascaro [aut], Nuno Simoes [aut], Juan Cruz-Motta [aut], Juan Cajas [aut]

SSP_1.1.0.tar.gz
SSP_1.1.0.zip(r-4.7)SSP_1.1.0.zip(r-4.6)SSP_1.1.0.zip(r-4.5)
SSP_1.1.0.tgz(r-4.6-any)SSP_1.1.0.tgz(r-4.5-any)
SSP_1.1.0.tar.gz(r-4.7-any)SSP_1.1.0.tar.gz(r-4.6-any)
SSP_1.1.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION |NEWS
card.svg |card.png
SSP/json (API)

# Install 'SSP' in R:

install.packages('SSP', repos = c('https://edlinguerra.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/edlinguerra/ssp/issues

Datasets:

epibionts - Epibionts on Caribbean mangrove roots
micromollusk - Micromollusks of marine shallow sandy bottoms around Cayo Nuevo, Gulf of Mexico, Mexico
pilot - Epibionts on Caribbean mangrove roots: pilot data
sponges - Sponges in Alacranes Reef National Park (ARNP), Gulf of Mexico, Mexico

On CRAN:

6.08 score 2 stars 1 packages 20 scripts 222 downloads 81 mentions 7 exports 27 dependencies

Last updated from:51d0e1cbb9. Checks:9 OK. Indexed: yes.

Target	Result	Time
linux-devel-x86_64	OK	150
source / vignettes	OK	190
linux-release-x86_64	OK	150
macos-release-arm64	OK	153
macos-oldrel-arm64	OK	152
windows-devel	OK	116
windows-release	OK	96
windows-oldrel	OK	103
wasm-release	OK	102

Exports:assempar datquality ioptimum plot_ssp sampsd simdata summary_ssp

Dependencies:cli cluster cpp11 farver ggplot2 glue gtable isoband labeling lattice lifecycle lpSolve MASS Matrix mgcv nlme permute R6 RColorBrewer rlang S7 sampling scales vctrs vegan viridisLite withr

Estimation of sampling effort in community ecology with SSP

Rendered fromSSP-guide.Rmdusingknitr::rmarkdown

Help page	Topics
SSP: Simulated Sampling Procedure for Community Ecology	SSP
Estimation of Ecological Parameters of the Assemblage	assempar
Diversity Metrics of Simulated and Original Data	datquality
Epibionts on Caribbean mangrove roots	epibionts
Identification of the Optimal Sampling Effort	ioptimum
Micromollusks of marine shallow sandy bottoms around Cayo Nuevo, Gulf of Mexico, Mexico	micromollusk
Epibionts on Caribbean mangrove roots: pilot data	pilot
SSP Plot: Visualization of MultSE and Sampling Effort	plot_ssp
Sampling Simulated Data and Estimation of Multivariate Standard Errors	sampsd
Simulation of Ecological Data Sets	simdata
Sponges in Alacranes Reef National Park (ARNP), Gulf of Mexico, Mexico	sponges
Summary of MultSE for Each Sampling Effort in Simulated Data Sets	summary_ssp

Help page

Topics

SSP: Simulated Sampling Procedure for Community Ecology

SSP

Estimation of Ecological Parameters of the Assemblage

assempar

Diversity Metrics of Simulated and Original Data

datquality

Epibionts on Caribbean mangrove roots

epibionts

Identification of the Optimal Sampling Effort

ioptimum